PubMan 7 3

This page shall contain every change that is made during a qa release of the version mentioned above. If it's not here, it never happened!

PubMan 7.3 Release

Affected Servers

• http://qa-pubman.mpdl.mpg.de/
• http://qa-coreservice.mpdl.mpg.de:8080/

• http://pubman.mpdl.mpg.de/
• http://coreservice.mpdl.mpg.de/

• http://test-pubman.mpdl.mpg.de/
• http://test-coreservice.mpdl.mpg.de:8080/

• http://nims.mpdl.mpg.de/
• http://nims-coreservice.mpdl.mpg.de:8080/

• http://migration-pubman.mpdl.mpg.de/
• http://migration-coreservice.mpdl.mpg.de:8080/

Fedora

• PID Migration on srv01.mpdl.mpg.de
  • save /opt/fedora/data/objects
  • save database(fedora3 and riTriples)
  • adapt properties in pidMigration.properties

# pidcache server configuration - getting the PIDs from
escidoc.pidcache.service.url=http://srv03.mpdl.mpg.de:8080/pidcache/handle
escidoc.pidcache.server=srv03.mpdl.mpg.de
escidoc.pidcache.user.name=pid_manager
escidoc.pidcache.user.password=wannapid
escidoc.pidprovider.class=de.mpg.escidoc.handler.PIDProvider
# the pubman instance registering handles for
escidoc.pubman.instance.url=http://pubman.mpdl.mpg.de
escidoc.pubman.instance.context.path=/pubman
escidoc.pubman.item.pattern=/item/$1
escidoc.pubman.component.pattern=/item/$1/component/$2/$3
# triplestore database configuration - needed for item component mapping
triplestore.datasource.url=jdbc:postgresql://localhost:5432/riTriples
triplestore.datasource.driverClassName=org.postgresql.Driver
triplestore.datasource.username=postgres
triplestore.datasource.password=postgres
triplestore.datasource.table=t4

• run pid migration

 cd  /opt/fedora/data/objects
 java -jar pid_migration-1.0-SNAPSHOT-jar-with-dependencies.jar -transformvalidate .

• drop database and rebuild database (fedora3 and riTriples)

 CREATE DATABASE "fedora3" WITH ENCODING='UTF8' OWNER="fedoraAdmin";
 CREATE DATABASE "riTriples" WITH ENCODING='SQL_ASCII' OWNER="fedoraAdmin" TEMPLATE=template0;

 cd /opt/fedora/server/bin
 rebuild.sh (Enter 2-1; 1-1)

Coreservice JBoss

• pidmanager.war, PidManager.properties, gwdg.properties

Core Infrastructure

• install framework 1.3.9

Core Lucene Index

• copy xslt stylesheets from subversion to /usr/share/jboss/server/default/conf/search/config/index/escidoc_all and .. item/container_admin
• switch off optimize in escidoc-core.properties, e.g.

 escidoc-core.om.indexer.optimize.interval=0 0 2 1 12 ?

• reindex
• switch on optimize again

PubMan Properties

• Siegelnummer für PubMan:
  • escidoc.pubman.instance.seal_number=ZDB-97-MPR
• Kontexte für die der SSRN-Button verfügbar ist:
  • escidoc.pubman.instance.ssrn_contexts= TODO
• Stylesheet paths (Die anderen Stylesheets aus dem Ordner müssen auch aktuell sein! Genauso die vocabulary Mappings in transformations!)
  • escidoc.transformation.pmc2escidoc_publication_item.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/bmc2escidoc-publication-item.xsl
  • escidoc.transformation.pmc2escidoc_publication_component.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/pmc2escidoc-publication-component.xsl
  • escidoc.transformation.pmc_fulltext_xml2pmc_fulltext_xslfo.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/pmc_fulltext_xml2pmc_fulltext_xslfo.xsl
  • escidoc.transformation.bmc2escidoc_publication_item.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/bmc2escidoc-publication-item.xsl
  • escidoc.transformation.bmc2escidoc_publication_component.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/bmc2escidoc-publication-component.xsl
  • escidoc.transformation.bmc_fulltext_xml2bmc_fulltext_html.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/bmc_fulltext_xml2bmc_fulltext_html.xsl
  • escidoc.transformation.arxiv2escidoc_publication_item.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/arxiv2escidoc-publication-item.xsl
  • escidoc.transformation.arxiv2escidoc_publication_component.stylesheet.filename=/usr/share/jboss/server/default/conf/transformation/transformations/thirdParty/xslt/arxiv2escidoc-publication-component.xsl
• PID-Component-Pattern
  • escidoc.pubman.component.pattern=/item/$1/component/$2/$3
• Policy-Link
  • escidoc.pubman.policy.url=http://colab.mpdl.mpg.de/mediawiki/MPG.PuRe_Impressum (sollte auf Live schon angepasst sein)
• Bibtex-import implementierende Klasse
  • escidoc.transformation.bibtex.class=de.mpg.escidoc.services.transformation.transformations.commonPublicationFormats.Bibtex

Transformation Properties

• /usr/share/jboss-4.2.3.GA/server/default/conf/transformation/transformations/otherFormats/conf/edoc.properties
  • Add 'AEI' to 'import-name' (http://jira.mpdl.mpg.de/browse/PUBMAN-2368)

CoNE Database (all except zim02.gwdg.de)

• Add new columns type and sort to result table:

CREATE TABLE results (
   id character varying NOT NULL,
   value character varying NOT NULL,
   lang character varying,
   type character varying,
   sort character varying
);

• Provide new models.xml if externalized
• Reset journals (http://pubman-server-url/cone/reset.jsp?model=journals)
• Reset persons (http://pubman-server-url/cone/reset.jsp?model=persons)

PubMan Software Homepage

http://pubman.mpdl.mpg.de/software/

Miscellaneous

Statistics

• A new aggregation definition for the statistics was defined and is automatically created in the coreservice when PubMan starts up for the first time. Additionally, the complete statistics have to be preprocessed for this aggregation definition:
  • After first pubman start, find out aggregation-definition id (eg. by having a look in the escidoc-core database under sm: The prefix of the table 'pubman_object_stats' is the correct id)
  • Go to escidoc_core database
  • Copy values from old aggregation table to new aggregation table using the following sql

DELETE FROM sm.<aggregation_definition_id>_pubman_object_stats; INSERT INTO sm.<aggregation_definition_id>_pubman_object_stats ( SELECT handler, request, regexp_replace(object_id, '(.*:.*)(:.*)', '\1') AS short_object_id, regexp_replace(parent_object_id, '(.*:.*)(:.*)', '\1') AS short_parent_object_id, (user_id IS NOT NULL and user_id!='') AS user_id_available, month, year, sum(requests) FROM sm.escidocaggdef1_object_stats GROUP BY handler, request, short_object_id, short_parent_object_id, user_id_available, month, year);

Installer

• apache-fop-config.xml soll auch im Installer direkt ins conf-Verzeichnis des Servers übernommen werden

PubMan Configuration

• apache-fop-config.xml + Fonts von QA kopieren

Publication Management

Flexible Extensible Digital Object Repository Architecture

Persistent Identifer or Identification

Structured Query Language

American Standard Code for Information Interchange

Open Source and Most Widely Used Web Server

Open source Java EE-based application server

Enterprise Archive File Formate

Zeitschriftendatenbank

Social Science Research Network

Albert Einstein Institute

Control of Named Entities

Enhanced Scientific Documentation

Quality Assurance