Difference between revisions of "PubMan Func Spec Submission/BioMed Central Mapping"
Jump to navigation
Jump to search
Kleinfercher (talk | contribs) |
Kleinfercher (talk | contribs) m (→Mapping) |
||
Line 27: | Line 27: | ||
|- | |- | ||
|ArticleSet.Article.Journal.PubDate.Day ||Publication.Date ||pubStatus||see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | |ArticleSet.Article.Journal.PubDate.Day ||Publication.Date ||pubStatus||see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | ||
|- | |-bgcolor="#B4EEB4" | ||
|ArticleSet.Article.Journal.PubDate.Season ||not mapped||--|| | |ArticleSet.Article.Journal.PubDate.Season ||not mapped||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
|ArticleSet.Article.Replaces||not mapped||--||The identifier of the article that this one replaces. | |ArticleSet.Article.Replaces||not mapped||--||The identifier of the article that this one replaces. | ||
|- | |- | ||
Line 37: | Line 37: | ||
|- | |- | ||
| ArticleSet.Article.FirstPage ||Publication.Source.StartPage||-- || | | ArticleSet.Article.FirstPage ||Publication.Source.StartPage||-- || | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.FirstPage.LZero.save/delete ||not mapped||LZero ||How to handle leading zeros | | ArticleSet.Article.FirstPage.LZero.save/delete ||not mapped||LZero ||How to handle leading zeros | ||
|- | |- | ||
Line 43: | Line 43: | ||
|- | |- | ||
| ArticleSet.Article.ELocationID||Publication.Source.SequenceNumber||--|| | | ArticleSet.Article.ELocationID||Publication.Source.SequenceNumber||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.ELocationID.ValidYN.Y/N||not mapped||ValidYN || | | ArticleSet.Article.ELocationID.ValidYN.Y/N||not mapped||ValidYN || | ||
|- | |- | ||
Line 53: | Line 53: | ||
|- | |- | ||
| ArticleSet.Article.AuthorList.Author.LastName||Publication.Creator.Person.FamilyName||--|| | | ArticleSet.Article.AuthorList.Author.LastName||Publication.Creator.Person.FamilyName||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.AuthorList.Author.Suffix ||not mapped||--||The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". | | ArticleSet.Article.AuthorList.Author.Suffix ||not mapped||--||The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". | ||
|- | |- | ||
Line 73: | Line 73: | ||
|- | |- | ||
| ArticleSet.Article.GroupList.Group.IndividualName.Affiliation ||..||--||??? | | ArticleSet.Article.GroupList.Group.IndividualName.Affiliation ||..||--||??? | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.PublicationType||not mapped ???||--||Free Text | | ArticleSet.Article.PublicationType||not mapped ???||--||Free Text | ||
|- | |- | ||
Line 95: | Line 95: | ||
|- | |- | ||
| ArticleSet.Article.History.PubDate.Day ||Publication.Date ||pubStatus|| see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | | ArticleSet.Article.History.PubDate.Day ||Publication.Date ||pubStatus|| see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.History.PubDate.Season ||not mapped||--|| | | ArticleSet.Article.History.PubDate.Season ||not mapped||--|| | ||
|- | |- | ||
Line 105: | Line 105: | ||
|- | |- | ||
| ArticleSet.Article.OtherAbstract||Publication.Abstract||--||The abstract can contain markup which should be kept. | | ArticleSet.Article.OtherAbstract||Publication.Abstract||--||The abstract can contain markup which should be kept. | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.CopyrightInformation||no mapping ||--||Perhaps with new R5 copyrighht feature? | | ArticleSet.Article.CopyrightInformation||no mapping ||--||Perhaps with new R5 copyrighht feature? | ||
|- | |- |
Revision as of 13:12, 5 March 2009
BioMed Central - PubMan Mapping[edit]
Mapping[edit]
BioMed Central Element | PubMan Metadata Set | Attribute | Description |
---|---|---|---|
ArticleSet.Article | Publication set type="article" and Publication.Source set type="journal" | -- | Root envelop |
ArticleSet.Article.Journal.PublisherName | Publication.Source.PublishingInfo.Publisher | -- | |
ArticleSet.Article.Journal.JournalTitle | Publication.Source.Title | -- | |
ArticleSet.Article.Journal.Issn | Publication.Source.Identifier set Type="eidt:ISSN" | -- | |
ArticleSet.Article.Journal.Volume | Publication.Source.Volume | -- | |
ArticleSet.Article.Journal.Issue | Publication.Source.Issue | -- | |
ArticleSet.Article.Journal.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Season | not mapped | -- | |
ArticleSet.Article.Replaces | not mapped | -- | The identifier of the article that this one replaces. |
ArticleSet.Article.ArticleTitle | Publication.Title | -- | |
ArticleSet.Article.VernacularTitle | Publication.AlternativeTitle | -- | The article title in the original language, if not in English. Used only for Latin based alphabets. |
ArticleSet.Article.FirstPage | Publication.Source.StartPage | -- | |
ArticleSet.Article.FirstPage.LZero.save/delete | not mapped | LZero | How to handle leading zeros |
ArticleSet.Article.LastPage | Publication.Source.EndPage | -- | .. |
ArticleSet.Article.ELocationID | Publication.Source.SequenceNumber | -- | |
ArticleSet.Article.ELocationID.ValidYN.Y/N | not mapped | ValidYN | |
ArticleSet.Article.AuthorList.Author | Publication.Creator set role = "Author" | -- | |
ArticleSet.Article.AuthorList.Author.FirstName | Publication.Creator.Person.GivenName | -- | |
ArticleSet.Article.AuthorList.Author.MiddleName | not mapped | -- | |
ArticleSet.Article.AuthorList.Author.LastName | Publication.Creator.Person.FamilyName | -- | |
ArticleSet.Article.AuthorList.Author.Suffix | not mapped | -- | The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". |
ArticleSet.Article.AuthorList.Author.CollectiveName | Publication.CompleteName | -- | |
ArticleSet.Article.AuthorList.Author.Affiliation | Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier> | -- | |
ArticleSet.Article.GroupList.Group | Publication.Creator set role = "Author" | -- | |
ArticleSet.Article.GroupList.Group.GroupName | Publication.Creator.Organization.Name | -- | |
ArticleSet.Article.GroupList.Group.IndividualName | Publication.Creator.Organization.Name | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.MiddleName | not mapped | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.LastName | .. | -- | ??? |
ArticleSet.Article.GroupList.Group.IndividualName.Suffix | not mapped | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.Affiliation | .. | -- | ??? |
ArticleSet.Article.PublicationType | not mapped ??? | -- | Free Text |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.doi | Publication.Identifier set Type="dcterms:DOI" | idType | |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pii | Publication.Identifier set Type="other" | idType | set prefix pii: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcpid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmpid | Publication.Identifier set Type="other" | idType | set prefix pmpid: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pubmed | Publication.Identifier set Type="other" | idType | set prefix pubmed: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.medline | Publication.Identifier set Type="other" | idType | set prefix medline: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
ArticleSet.Article.History.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Season | not mapped | -- | |
ArticleSet.Article.Abstract | Publication.Abstract | -- | |
ArticleSet.Article.Abstract.sup | Publication.Abstract ??? | -- | What is the difference? Could not find example. |
ArticleSet.Article.Abstract.inf | Publication.Abstract ??? | -- | What is the difference? Could not find example. |
ArticleSet.Article.OtherAbstract | Publication.Abstract | -- | The abstract can contain markup which should be kept. |
ArticleSet.Article.CopyrightInformation | no mapping | -- | Perhaps with new R5 copyrighht feature? |
ArticleSet.Article.ObjectList.Param.Type.Name | .. | Type | .. |
PubStatus Mapping[edit]
PubStatus | PubMan DateType | Description |
---|---|---|
received | submitted | date manuscript received for review |
accepted | accepted | accepted for publication |
epublish | published online | |
ppublish (default) | published in print | |
revised | modified | article revised by publisher or author |
aheadofprint | published online | electronically published, but followed by print |
pmc | ||
pmcr | ||
pubmed | ||
pubmedr | ||
premedline | ||
medline | ||
medliner |
Annotations[edit]
This mapping bases on the BioMed Central pubmed schema which is an extension of the NCBI pubmed schema (see references).