Difference between revisions of "PubMan Func Spec Submission/BioMed Central Mapping"
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If no PubStatus is provided DateType should be 'published in print' (default). | |||
===Annotations=== | ===Annotations=== |
Revision as of 13:30, 5 March 2009
BioMed Central - PubMan Mapping[edit]
Mapping[edit]
BioMed Central Element | PubMan Metadata Set | Attribute | Description |
---|---|---|---|
ArticleSet.Article | Publication set type="article" and Publication.Source set type="journal" | -- | Root envelop |
ArticleSet.Article.Journal.PublisherName | Publication.Source.PublishingInfo.Publisher | -- | |
ArticleSet.Article.Journal.JournalTitle | Publication.Source.Title | -- | |
ArticleSet.Article.Journal.Issn | Publication.Source.Identifier set Type="eidt:ISSN" | -- | |
ArticleSet.Article.Journal.Volume | Publication.Source.Volume | -- | |
ArticleSet.Article.Journal.Issue | Publication.Source.Issue | -- | |
ArticleSet.Article.Journal.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.Journal.PubDate.Season | not mapped | -- | |
ArticleSet.Article.Replaces | not mapped | -- | The identifier of the article that this one replaces. |
ArticleSet.Article.ArticleTitle | Publication.Title | -- | |
ArticleSet.Article.VernacularTitle | Publication.AlternativeTitle | -- | The article title in the original language, if not in English. Used only for Latin based alphabets. |
ArticleSet.Article.FirstPage | Publication.Source.StartPage | -- | |
ArticleSet.Article.FirstPage.LZero.save/delete | not mapped | LZero | How to handle leading zeros |
ArticleSet.Article.LastPage | Publication.Source.EndPage | -- | .. |
ArticleSet.Article.ELocationID | Publication.Source.SequenceNumber | -- | |
ArticleSet.Article.ELocationID.ValidYN.Y/N | not mapped | ValidYN | |
ArticleSet.Article.AuthorList.Author | Publication.Creator set role = "Author" | -- | |
ArticleSet.Article.AuthorList.Author.FirstName | Publication.Creator.Person.GivenName | -- | |
ArticleSet.Article.AuthorList.Author.MiddleName | not mapped | -- | |
ArticleSet.Article.AuthorList.Author.LastName | Publication.Creator.Person.FamilyName | -- | |
ArticleSet.Article.AuthorList.Author.Suffix | not mapped | -- | The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". |
ArticleSet.Article.AuthorList.Author.CollectiveName | ??? | -- | The name of the authoring committee or organization. CollectiveName can be used instead of or in addition to a personal name. |
ArticleSet.Article.AuthorList.Author.Affiliation | Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier> | -- | |
ArticleSet.Article.GroupList.Group | Publication.Creator set role = "Author" | -- | |
ArticleSet.Article.GroupList.Group.GroupName | Publication.Creator.Organization.Name | -- | |
ArticleSet.Article.GroupList.Group.IndividualName | Publication.Creator.Organization.Name | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.MiddleName | not mapped | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.LastName | .. | -- | ??? |
ArticleSet.Article.GroupList.Group.IndividualName.Suffix | not mapped | -- | |
ArticleSet.Article.GroupList.Group.IndividualName.Affiliation | .. | -- | ??? |
ArticleSet.Article.PublicationType | not mapped ??? | -- | Used to identify the type of article. The only available PublicationTypes are NEWS, LETTER or EDITORIAL. The default value, JOURNAL ARTICLE, will be added to citations if this tag is left blank or an invalid PublicationType is used. |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.doi | Publication.Identifier set Type="dcterms:DOI" | idType | |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pii | Publication.Identifier set Type="other" | idType | set prefix pii: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcpid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmpid | Publication.Identifier set Type="other" | idType | set prefix pmpid: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pubmed | Publication.Identifier set Type="other" | idType | set prefix pubmed: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.medline | Publication.Identifier set Type="other" | idType | set prefix medline: |
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
ArticleSet.Article.History.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
ArticleSet.Article.History.PubDate.Season | not mapped | -- | |
ArticleSet.Article.Abstract | Publication.Abstract | -- | The abstract element can contain markup which we have to parse out |
ArticleSet.Article.OtherAbstract | Publication.Abstract | -- | The abstract element can contain markup which we have to parse out |
ArticleSet.Article.CopyrightInformation | no mapped | -- | Perhaps with new R5 copyrighht feature? |
ArticleSet.Article.ObjectList.Param.Type.Name | ??? | Type | Have to find example |
PubStatus Mapping[edit]
Mapping of PubStatus Type to PubMan DateType:
PubStatus | PubMan DateType | Description |
---|---|---|
received | submitted | date manuscript received for review |
accepted | accepted | accepted for publication |
epublish | published online | |
ppublish (default) | published in print | |
revised | modified | article revised by publisher or author |
aheadofprint | published online | electronically published, but followed by print |
pmc | ??? | |
pmcr | ??? | |
pubmed | ??? | |
pubmedr | ??? | |
premedline | ??? | |
medline | ??? | |
medliner | ??? |
If no PubStatus is provided DateType should be 'published in print' (default).
Annotations[edit]
This mapping bases on the BioMed Central pubmed schema which is an extension of the NCBI pubmed schema (see references).