Difference between revisions of "PubMan Func Spec Submission/PubMed Central Mapping"
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|article||Publication set type="article" and <br/> Publication.Source set type="journal"|| once||--||Root envelope | |article||Publication set type="article" and <br/> Publication.Source set type="journal"|| once||--||Root envelope | ||
|- | |- | ||
|journal-id||if journal-id-type= issn: <br/> Publication.Source.Identifier set Type="eidt:ISSN" <br/>if journal-id-type= doi: <br/>Publication.Source.Identifier set Type="dcterms:DOI"<br/> else: Publication.Source.Identifier set Type="other ???" || once || journal-id-type ||identifier for the journal | |journal-meta.journal-id||if journal-id-type= issn: <br/> Publication.Source.Identifier set Type="eidt:ISSN" <br/>if journal-id-type= doi: <br/>Publication.Source.Identifier set Type="dcterms:DOI"<br/> else: Publication.Source.Identifier set Type="other ???" || once || journal-id-type ||identifier for the journal | ||
|- | |- | ||
|journal-title||Publication.Source.Title ||zero or many || ||The title of the journal | |journal-meta.journal-title||Publication.Source.Title ||zero or many || ||The title of the journal | ||
|- | |- | ||
|journal-subtitle||Publication.Source.AlternativeTitle|| zero or many || ||The subtitle of the journal | |journal-meta.journal-subtitle||Publication.Source.AlternativeTitle|| zero or many || ||The subtitle of the journal | ||
|- | |- | ||
|trans-title||Publication.Source.AlternativeTitle|| zero or many ||content-type, id, xml:lang ||An alternative version of a title that has been translated into a language other than that of the original title | |journal-meta.trans-title||Publication.Source.AlternativeTitle|| zero or many ||content-type, id, xml:lang ||An alternative version of a title that has been translated into a language other than that of the original title | ||
|- | |- | ||
|trans-subtitle||Publication.Source.AlternativeTitle|| zero or many ||content-type, id, xml:lang ||An alternative version of a subtitle that has been translated into a language other than that of the original subtitle | |journal-meta.trans-subtitle||Publication.Source.AlternativeTitle|| zero or many ||content-type, id, xml:lang ||An alternative version of a subtitle that has been translated into a language other than that of the original subtitle | ||
|- | |- | ||
|abbrev-journal-title||Publication.Source.AlternativeTitle|| zero or many|| abbrev-type ||A short form of the title of the journal | |journal-meta.abbrev-journal-title||Publication.Source.AlternativeTitle|| zero or many|| abbrev-type ||A short form of the title of the journal | ||
|- | |- | ||
|issn||Publication.Source.Identifier set Type="eidt:ISSN"|| zero or many || ||International Standard Series Number | |journal-meta.issn||Publication.Source.Identifier set Type="eidt:ISSN"|| zero or many || ||International Standard Series Number | ||
|- | |- | ||
|publisher-name||Publication.Source.PublishingInfo.Publisher|| once || || | |journal-meta.publisher.publisher-name||Publication.Source.PublishingInfo.Publisher|| once || || | ||
|- | |- | ||
|publisher-loc||Publication.Source.PublishingInfo.Place|| zero or once || || | |journal-meta.publisher.publisher-loc||Publication.Source.PublishingInfo.Place|| zero or once || || | ||
|- | |- | ||
|article-id||if pub-id-type= issn: <br/>Publication.Identifier set Type="ISSN" <br/>if pub-id-type= doi: <br/>Publication.Identifier set Type="dcterms:DOI"<br/> else: Publication.Identifier set Type="other ???" ||zero or many || pub-id-type || | |article-meta.article-id||if pub-id-type= issn: <br/>Publication.Identifier set Type="ISSN" <br/>if pub-id-type= doi: <br/>Publication.Identifier set Type="dcterms:DOI"<br/> else: Publication.Identifier set Type="other ???" ||zero or many || pub-id-type || | ||
|- | |- | ||
|subject||Publication.Subject|| once or many ||content-type ||Name of one subject | |article-meta.article-categories.subject-group.subject||Publication.Subject|| once or many ||content-type ||Name of one subject | ||
|- | |- | ||
|article-title||Publication.Title|| once ||id, xml:lang ||The full title of a article | |article-meta.title-group.article-title||Publication.Title|| once ||id, xml:lang ||The full title of a article | ||
|- | |- | ||
|subtitle||Publication.AlternativeTitle|| zero or many ||content-type, xml:lang ||The subtitle of a article | |article-meta.title-group.subtitle||Publication.AlternativeTitle|| zero or many ||content-type, xml:lang ||The subtitle of a article | ||
|- | |- | ||
|trans-title||Publication.AlternativeTitle|| zero or many||content-type, id, xml:lang ||An alternative version of an article title that has been translated into a language other than that of the original article title | |article-meta.title-group.trans-title||Publication.AlternativeTitle|| zero or many||content-type, id, xml:lang ||An alternative version of an article title that has been translated into a language other than that of the original article title | ||
|- | |- | ||
|trans-subtitle||Publication.AlternativeTitle|| zero or many||content-type, id, xml:lang ||An alternative version of an article subtitle that has been translated into a language other than that of the original article subtitle | |article-meta.title-group.trans-subtitle||Publication.AlternativeTitle|| zero or many||content-type, id, xml:lang ||An alternative version of an article subtitle that has been translated into a language other than that of the original article subtitle | ||
|- | |- | ||
|alt-title||Publication.AlternativeTitle||zero or many|| alt-title-type ||An alternative or “different” version of an article title | |article-meta.title-group.alt-title||Publication.AlternativeTitle||zero or many|| alt-title-type ||An alternative or “different” version of an article title | ||
|- | |- | ||
|contrib||creatortype = person <br/>if contrib-type=author or Author <br/> Publication.Creator set role = "Author" <br/> if contrib-type= editor or Editor <br/> Publication.Creator set role = "Editor" <br/> else: Publication.Creator set role = "Contributer"|| once or many ||contrib-type, corresp, deceased, equal-contrib, id, rid, xlink:actuate, xlink:href, xlink:role, xlink:show, xlink:title, xlink:type, xmlns:xlink||Wrapper element to contain the information about a single contributor | |article-meta.contrib-group.contrib||creatortype = person <br/>if contrib-type=author or Author <br/> Publication.Creator set role = "Author" <br/> if contrib-type= editor or Editor <br/> Publication.Creator set role = "Editor" <br/> else: Publication.Creator set role = "Contributer"|| once or many ||contrib-type, corresp, deceased, equal-contrib, id, rid, xlink:actuate, xlink:href, xlink:role, xlink:show, xlink:title, xlink:type, xmlns:xlink||Wrapper element to contain the information about a single contributor | ||
|- | |- | ||
|surname||Publication.Creator.Person.FamilyName|| once || initials ||The surname of a person | |article-meta.contrib.name.surname||Publication.Creator.Person.FamilyName|| once || initials ||The surname of a person | ||
|- | |- | ||
|given-names||Publication.Creator.Person.GivenName|| zero or once || initials ||The surname of a person | |article-meta.contrib.name.given-names||Publication.Creator.Person.GivenName|| zero or once || initials ||The surname of a person | ||
:in here we take all given names and concatenate them into the GivenName of the person? | :in here we take all given names and concatenate them into the GivenName of the person? | ||
:This tag contains one String with all person names. We will put them all in our givenName field--[[User:Kleinfercher|Kleinfercher]] 10:04, 26 November 2008 (UTC) | :This tag contains one String with all person names. We will put them all in our givenName field--[[User:Kleinfercher|Kleinfercher]] 10:04, 26 November 2008 (UTC) | ||
|- | |- | ||
|aff||Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier>|| once || content-type, id, rid||the affiliation for a contributor | |article-meta.contrib-group.aff||Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier>|| once || content-type, id, rid||the affiliation for a contributor | ||
|- | |- | ||
|addr-line||Publication.Creator.Person.Organization.Adress|| zero or once || content-type||An address | |article-meta.contrib-group.addr-line||Publication.Creator.Person.Organization.Adress|| zero or once || content-type||An address | ||
|- | |- | ||
|pub-date||Publication.Date <br/> if pub-type= epub: DateType = published online <br/> if pub-type= ppub: DateType = published in print, <br/> if pub-type= epub-ppub: DateType = published online & published in print <br/> if pub-type=ecorrected: DateType = modified <br/> if pub-type= pcorrected: DateType = modified || zero or many ||pub-type (epub, ppub, epub-ppub, epreprint, ppreprint, ecorrected, pcorrected, eretracted, pretracted)||Date this article was published or released in one particular format | |article-meta.pub-date||Publication.Date <br/> if pub-type= epub: DateType = published online <br/> if pub-type= ppub: DateType = published in print, <br/> if pub-type= epub-ppub: DateType = published online & published in print <br/> if pub-type=ecorrected: DateType = modified <br/> if pub-type= pcorrected: DateType = modified || zero or many ||pub-type (epub, ppub, epub-ppub, epreprint, ppreprint, ecorrected, pcorrected, eretracted, pretracted)||Date this article was published or released in one particular format | ||
|- | |- | ||
|volume||Publication.Source.Volume || zero or once ||content-type, seq ||Number of a journal within a series | |article-meta.volume||Publication.Source.Volume || zero or once ||content-type, seq ||Number of a journal within a series | ||
|- | |- | ||
|issue||Publication.Source.Issue|| zero or once ||content-type, seq ||The issue number of a journal | |article-meta.issue||Publication.Source.Issue|| zero or once ||content-type, seq ||The issue number of a journal | ||
|- | |- | ||
|issue-id||If new Source Issue created, then <br/> Publication.Source(2).Identifier = issue-id, type = mapping like journal-id type|| zero or many ||content-type, pub-id-type ||Used to record a name or identifier, such as a DOI, that describes an entire issue of a journal | |article-meta.issue-id||If new Source Issue created, then <br/> Publication.Source(2).Identifier = issue-id, type = mapping like journal-id type|| zero or many ||content-type, pub-id-type ||Used to record a name or identifier, such as a DOI, that describes an entire issue of a journal | ||
|- | |- | ||
|issue-title||Create new Source with type Issue <br/> Publication.Source(2).Title = issue-title||zero or many ||content-type||Used to record the theme or special issue title for an issue of the journal (source of source) | |article-meta.issue-title||Create new Source with type Issue <br/> Publication.Source(2).Title = issue-title||zero or many ||content-type||Used to record the theme or special issue title for an issue of the journal (source of source) | ||
|- | |- | ||
|ext-link||File.Identifier <br/> set type=URI, contentCategory= Supplementary Material || zero or many ||...xlink:href, xlink:title...||Link to an external file (Needs to be discussed further!!!) | |article-meta.ext-link||File.Identifier <br/> set type=URI, contentCategory= Supplementary Material || zero or many ||...xlink:href, xlink:title...||Link to an external file (Needs to be discussed further!!!) | ||
|- | |- | ||
|self-uri||Publication.Identifier set Type=URI|| zero or many ||...||The textual content of this element may be a URI | |article-meta.self-uri||Publication.Identifier set Type=URI|| zero or many ||...||The textual content of this element may be a URI | ||
|- | |- | ||
|fpage||Publication.Source.StartPage|| zero or once ||content-type, seq||The page number on which an article starts | |article-meta.fpage||Publication.Source.StartPage|| zero or once ||content-type, seq||The page number on which an article starts | ||
|- | |- | ||
|lpage||Publication.Source.EndPage|| zero or once ||content-type||The page number on which the article ends | |article-meta.lpage||Publication.Source.EndPage|| zero or once ||content-type||The page number on which the article ends | ||
|- | |- | ||
|page-range|| TotalNumberOfPages|| zero or once ||content-type||A container element for additional page information to record discontinuous pages ranges | |article-meta.page-range|| TotalNumberOfPages|| zero or once ||content-type||A container element for additional page information to record discontinuous pages ranges | ||
|- | |- | ||
|elocation-id||Publication.Source.SequenceNumber|| zero or once ||content-type, seq||Page identifier for an article that does not have traditional page numbers | |article-meta.elocation-id||Publication.Source.SequenceNumber|| zero or once ||content-type, seq||Page identifier for an article that does not have traditional page numbers | ||
|- | |- | ||
|abstract||Publication.Abstract || zero or once ||abstract-type, id, xml:lang|| | |article-meta.abstract||Publication.Abstract || zero or once ||abstract-type, id, xml:lang|| | ||
|- | |- | ||
|trans-abstract||Publication.Abstract || zero or once ||abstract-type, id, xml:lang|| | |article-meta.trans-abstract||Publication.Abstract || zero or once ||abstract-type, id, xml:lang|| | ||
|- | |- | ||
|kwd||Publication.Subject||once or many ||id|| | |article-meta.kwd-group.kwd||Publication.Subject||once or many ||id|| | ||
|- | |- | ||
|conf-date||Publication.Event.StartDate || zero or many ||content-type|| | |article-meta.conference.conf-date||Publication.Event.StartDate || zero or many ||content-type|| | ||
|- | |- | ||
|conf-name||Publication.Event.Title || zero or many ||content-type|| | |article-meta.conference.conf-name||Publication.Event.Title || zero or many ||content-type|| | ||
|- | |- | ||
|conf-num||Add to Publication.Event.AlternativeTitle||zero or many ||content-type|| | |article-meta.conference.conf-num||Add to Publication.Event.AlternativeTitle||zero or many ||content-type|| | ||
|- | |- | ||
|conf-loc||Publication.Event.Place|| zero or many ||content-type|| | |article-meta.conference.conf-loc||Publication.Event.Place|| zero or many ||content-type|| | ||
|- | |- | ||
|conf-acronym||Publication.Event.AlternativeTitle|| zero or many |||| | |article-meta.conference.conf-acronym||Publication.Event.AlternativeTitle|| zero or many |||| | ||
|} | |} | ||
Revision as of 08:20, 28 November 2008
PubMed Central - PubMan Mapping[edit]
This mapping is related to the Journal Archiving and Interchange Tag Set Tag Library version 2.3
Mapping[edit]
| PubMed Central Element | PubMan Metadata Set | Occurrence | Attribute | Description |
|---|---|---|---|---|
| article | Publication set type="article" and Publication.Source set type="journal" |
once | -- | Root envelope |
| journal-meta.journal-id | if journal-id-type= issn: Publication.Source.Identifier set Type="eidt:ISSN" if journal-id-type= doi: Publication.Source.Identifier set Type="dcterms:DOI" else: Publication.Source.Identifier set Type="other ???" |
once | journal-id-type | identifier for the journal |
| journal-meta.journal-title | Publication.Source.Title | zero or many | The title of the journal | |
| journal-meta.journal-subtitle | Publication.Source.AlternativeTitle | zero or many | The subtitle of the journal | |
| journal-meta.trans-title | Publication.Source.AlternativeTitle | zero or many | content-type, id, xml:lang | An alternative version of a title that has been translated into a language other than that of the original title |
| journal-meta.trans-subtitle | Publication.Source.AlternativeTitle | zero or many | content-type, id, xml:lang | An alternative version of a subtitle that has been translated into a language other than that of the original subtitle |
| journal-meta.abbrev-journal-title | Publication.Source.AlternativeTitle | zero or many | abbrev-type | A short form of the title of the journal |
| journal-meta.issn | Publication.Source.Identifier set Type="eidt:ISSN" | zero or many | International Standard Series Number | |
| journal-meta.publisher.publisher-name | Publication.Source.PublishingInfo.Publisher | once | ||
| journal-meta.publisher.publisher-loc | Publication.Source.PublishingInfo.Place | zero or once | ||
| article-meta.article-id | if pub-id-type= issn: Publication.Identifier set Type="ISSN" if pub-id-type= doi: Publication.Identifier set Type="dcterms:DOI" else: Publication.Identifier set Type="other ???" |
zero or many | pub-id-type | |
| article-meta.article-categories.subject-group.subject | Publication.Subject | once or many | content-type | Name of one subject |
| article-meta.title-group.article-title | Publication.Title | once | id, xml:lang | The full title of a article |
| article-meta.title-group.subtitle | Publication.AlternativeTitle | zero or many | content-type, xml:lang | The subtitle of a article |
| article-meta.title-group.trans-title | Publication.AlternativeTitle | zero or many | content-type, id, xml:lang | An alternative version of an article title that has been translated into a language other than that of the original article title |
| article-meta.title-group.trans-subtitle | Publication.AlternativeTitle | zero or many | content-type, id, xml:lang | An alternative version of an article subtitle that has been translated into a language other than that of the original article subtitle |
| article-meta.title-group.alt-title | Publication.AlternativeTitle | zero or many | alt-title-type | An alternative or “different” version of an article title |
| article-meta.contrib-group.contrib | creatortype = person if contrib-type=author or Author Publication.Creator set role = "Author" if contrib-type= editor or Editor Publication.Creator set role = "Editor" else: Publication.Creator set role = "Contributer" |
once or many | contrib-type, corresp, deceased, equal-contrib, id, rid, xlink:actuate, xlink:href, xlink:role, xlink:show, xlink:title, xlink:type, xmlns:xlink | Wrapper element to contain the information about a single contributor |
| article-meta.contrib.name.surname | Publication.Creator.Person.FamilyName | once | initials | The surname of a person |
| article-meta.contrib.name.given-names | Publication.Creator.Person.GivenName | zero or once | initials | The surname of a person
|
| article-meta.contrib-group.aff | Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier> | once | content-type, id, rid | the affiliation for a contributor |
| article-meta.contrib-group.addr-line | Publication.Creator.Person.Organization.Adress | zero or once | content-type | An address |
| article-meta.pub-date | Publication.Date if pub-type= epub: DateType = published online if pub-type= ppub: DateType = published in print, if pub-type= epub-ppub: DateType = published online & published in print if pub-type=ecorrected: DateType = modified if pub-type= pcorrected: DateType = modified |
zero or many | pub-type (epub, ppub, epub-ppub, epreprint, ppreprint, ecorrected, pcorrected, eretracted, pretracted) | Date this article was published or released in one particular format |
| article-meta.volume | Publication.Source.Volume | zero or once | content-type, seq | Number of a journal within a series |
| article-meta.issue | Publication.Source.Issue | zero or once | content-type, seq | The issue number of a journal |
| article-meta.issue-id | If new Source Issue created, then Publication.Source(2).Identifier = issue-id, type = mapping like journal-id type |
zero or many | content-type, pub-id-type | Used to record a name or identifier, such as a DOI, that describes an entire issue of a journal |
| article-meta.issue-title | Create new Source with type Issue Publication.Source(2).Title = issue-title |
zero or many | content-type | Used to record the theme or special issue title for an issue of the journal (source of source) |
| article-meta.ext-link | File.Identifier set type=URI, contentCategory= Supplementary Material |
zero or many | ...xlink:href, xlink:title... | Link to an external file (Needs to be discussed further!!!) |
| article-meta.self-uri | Publication.Identifier set Type=URI | zero or many | ... | The textual content of this element may be a URI |
| article-meta.fpage | Publication.Source.StartPage | zero or once | content-type, seq | The page number on which an article starts |
| article-meta.lpage | Publication.Source.EndPage | zero or once | content-type | The page number on which the article ends |
| article-meta.page-range | TotalNumberOfPages | zero or once | content-type | A container element for additional page information to record discontinuous pages ranges |
| article-meta.elocation-id | Publication.Source.SequenceNumber | zero or once | content-type, seq | Page identifier for an article that does not have traditional page numbers |
| article-meta.abstract | Publication.Abstract | zero or once | abstract-type, id, xml:lang | |
| article-meta.trans-abstract | Publication.Abstract | zero or once | abstract-type, id, xml:lang | |
| article-meta.kwd-group.kwd | Publication.Subject | once or many | id | |
| article-meta.conference.conf-date | Publication.Event.StartDate | zero or many | content-type | |
| article-meta.conference.conf-name | Publication.Event.Title | zero or many | content-type | |
| article-meta.conference.conf-num | Add to Publication.Event.AlternativeTitle | zero or many | content-type | |
| article-meta.conference.conf-loc | Publication.Event.Place | zero or many | content-type | |
| article-meta.conference.conf-acronym | Publication.Event.AlternativeTitle | zero or many |
Annotations[edit]
- The abstract element can contain markup which we have to parse out
- The eSciDoc Identifier type list will be enhanced with PMCID