Difference between revisions of "PubMan Func Spec Submission/BioMed Central Mapping"

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|- style="height:20px"
|- style="height:20px"
|received ||submitted||
|received ||submitted||date manuscript received for review
|-
|-
|accepted||accepted||
|accepted||accepted|| accepted for publication
|-
|-
|epublish||published online||
|epublish||published online||
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|ppublish (default)||published in print||
|ppublish (default)||published in print||
|-
|-
|revised||modified||
|revised||modified||article revised by publisher or author
|-
|-
|aheadofprint||published online|| electronically published, but followed by print
|aheadofprint||published online|| electronically published, but followed by print

Revision as of 13:03, 5 March 2009

BioMed Central - PubMan Mapping[edit]

Mapping[edit]

BioMed Central Element PubMan Metadata Set Attribute Description
ArticleSet.Article Publication set type="article" and Publication.Source set type="journal" -- Root envelop
ArticleSet.Article.Journal.PublisherName Publication.Source.PublishingInfo.Publisher --
ArticleSet.Article.Journal.JournalTitle Publication.Source.Title --
ArticleSet.Article.Journal.Issn Publication.Source.Identifier set Type="eidt:ISSN" --
ArticleSet.Article.Journal.Volume Publication.Source.Volume --
ArticleSet.Article.Journal.Issue Publication.Source.Issue --
ArticleSet.Article.Journal.PubDate.Year Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.Journal.PubDate.Month Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.Journal.PubDate.Day Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.Journal.PubDate.Season not mapped --
ArticleSet.Article.Replaces not mapped -- The identifier of the article that this one replaces.
ArticleSet.Article.ArticleTitle Publication.Title --
ArticleSet.Article.VernacularTitle Publication.AlternativeTitle -- The article title in the original language, if not in English. Used only for Latin based alphabets.
ArticleSet.Article.FirstPage Publication.Source.StartPage --
ArticleSet.Article.FirstPage.LZero.Save .. LZero ???
ArticleSet.Article.FirstPage.LZero.save .. LZero ???
ArticleSet.Article.FirstPage.LZero.delete .. LZero ???
ArticleSet.Article.LastPage Publication.Source.EndPage -- ..
ArticleSet.Article.ELocationID Publication.Source.SequenceNumber --
ArticleSet.Article.ELocationID.ValidYN.Y .. ValidYN ???
ArticleSet.Article.ELocationID.ValidYN.N .. ValidYN ???
ArticleSet.Article.Language Publication.Language -- ???
ArticleSet.Article.AuthorList.Author Publication.Creator set role = "Author" --
ArticleSet.Article.AuthorList.Author.FirstName Publication.Creator.Person.GivenName -- ..
ArticleSet.Article.AuthorList.Author.FirstName.EmptyYN.Y .. EmptyYN ???
ArticleSet.Article.AuthorList.Author.FirstName.EmptyYN.N .. EmptyYN ???
ArticleSet.Article.AuthorList.Author.MiddleName not mapped --
ArticleSet.Article.AuthorList.Author.LastName Publication.Creator.Person.FamilyName --
ArticleSet.Article.AuthorList.Author.Suffix not mapped -- The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.".
ArticleSet.Article.AuthorList.Author.CollectiveName Publication.CompleteName --
ArticleSet.Article.AuthorList.Author.Affiliation Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier> --
ArticleSet.Article.GroupList.Group Publication.Creator set role = "Author" --
ArticleSet.Article.GroupList.Group.GroupName Publication.Creator.Organization.Name --
ArticleSet.Article.GroupList.Group.IndividualName Publication.Creator.Organization.Name --
ArticleSet.Article.GroupList.Group.IndividualName.FirstName.EmptyYN.Y .. EmptyYN ???
ArticleSet.Article.GroupList.Group.IndividualName.FirstName.EmptyYN.N .. EmptyYN ???
ArticleSet.Article.GroupList.Group.IndividualName.MiddleName not mapped --
ArticleSet.Article.GroupList.Group.IndividualName.LastName .. -- ???
ArticleSet.Article.GroupList.Group.IndividualName.Suffix not mapped --
ArticleSet.Article.GroupList.Group.IndividualName.Affiliation .. -- ???
ArticleSet.Article.PublicationType not mapped ??? -- Free Text
ArticleSet.Article.ArticleIdList.ArticleId.IdType.doi Publication.Identifier set Type="dcterms:DOI" idType
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pii Publication.Identifier set Type="other" idType set prefix pii:
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcpid Publication.Identifier set Type="other" idType set prefix pmcid:
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmpid Publication.Identifier set Type="other" idType set prefix pmpid:
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pubmed Publication.Identifier set Type="other" idType set prefix pubmed:
ArticleSet.Article.ArticleIdList.ArticleId.IdType.medline Publication.Identifier set Type="other" idType set prefix medline:
ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcid Publication.Identifier set Type="other" idType set prefix pmcid:
ArticleSet.Article.History.PubDate.Year Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.History.PubDate.Month Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.History.PubDate.Day Publication.Date pubStatus see pubStatus mapping
ArticleSet.Article.History.PubDate.Season not mapped --
ArticleSet.Article.Abstract Publication.Abstract --
ArticleSet.Article.Abstract.sup Publication.Abstract ??? -- What is the difference? Could not find example.
ArticleSet.Article.Abstract.inf Publication.Abstract ??? -- What is the difference? Could not find example.
ArticleSet.Article.OtherAbstract Publication.Abstract --
ArticleSet.Article.OtherAbstract.sup Publication.Abstract ??? -- What is the difference? Could not find example.
ArticleSet.Article.OtherAbstract.inf Publication.Abstract ??? -- What is the difference? Could not find example.
ArticleSet.Article.CopyrightInformation no mapping -- Perhaps with new R5 copyrighht feature?
ArticleSet.Article.ObjectList.Param.Type.Name .. Type ..

PubStatus Mapping[edit]

PubStatus PubMan DateType Description
received submitted date manuscript received for review
accepted accepted accepted for publication
epublish published online
ppublish (default) published in print
revised modified article revised by publisher or author
aheadofprint published online electronically published, but followed by print
pmc
pmcr
pubmed
pubmedr
premedline
medline
medliner

Annotations[edit]

This mapping bases on pubmed schema

XML Examples[edit]

References[edit]

BioMed Central Homepage

BioMed Central OAI Info

pubmed schema from NCBI