Difference between revisions of "PubMan Func Spec Submission/BioMed Central Mapping"
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|ArticleSet.Article.Journal.PubDate.Day ||Publication.Date ||pubStatus||see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | |ArticleSet.Article.Journal.PubDate.Day ||Publication.Date ||pubStatus||see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | ||
|- | |-bgcolor="#B4EEB4" | ||
|ArticleSet.Article.Journal.PubDate.Season ||not mapped||--|| | |ArticleSet.Article.Journal.PubDate.Season ||not mapped||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
|ArticleSet.Article.Replaces||not mapped||--||The identifier of the article that this one replaces. | |ArticleSet.Article.Replaces||not mapped||--||The identifier of the article that this one replaces. | ||
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| ArticleSet.Article.FirstPage ||Publication.Source.StartPage||-- || | | ArticleSet.Article.FirstPage ||Publication.Source.StartPage||-- || | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.FirstPage.LZero.save/delete ||not mapped||LZero ||How to handle leading zeros | | ArticleSet.Article.FirstPage.LZero.save/delete ||not mapped||LZero ||How to handle leading zeros | ||
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| ArticleSet.Article.ELocationID||Publication.Source.SequenceNumber||--|| | | ArticleSet.Article.ELocationID||Publication.Source.SequenceNumber||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.ELocationID.ValidYN.Y/N||not mapped||ValidYN || | | ArticleSet.Article.ELocationID.ValidYN.Y/N||not mapped||ValidYN || | ||
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| ArticleSet.Article.AuthorList.Author.LastName||Publication.Creator.Person.FamilyName||--|| | | ArticleSet.Article.AuthorList.Author.LastName||Publication.Creator.Person.FamilyName||--|| | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.AuthorList.Author.Suffix ||not mapped||--||The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". | | ArticleSet.Article.AuthorList.Author.Suffix ||not mapped||--||The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". | ||
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| ArticleSet.Article.GroupList.Group.IndividualName.Affiliation ||..||--||??? | | ArticleSet.Article.GroupList.Group.IndividualName.Affiliation ||..||--||??? | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.PublicationType||not mapped ???||--||Free Text | | ArticleSet.Article.PublicationType||not mapped ???||--||Free Text | ||
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| ArticleSet.Article.History.PubDate.Day ||Publication.Date ||pubStatus|| see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | | ArticleSet.Article.History.PubDate.Day ||Publication.Date ||pubStatus|| see [[PubMan_Func_Spec_Submission/BioMed_Central_Mapping#PubStatus_Mapping | pubStatus mapping]] | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.History.PubDate.Season ||not mapped||--|| | | ArticleSet.Article.History.PubDate.Season ||not mapped||--|| | ||
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| ArticleSet.Article.OtherAbstract||Publication.Abstract||--||The abstract can contain markup which should be kept. | | ArticleSet.Article.OtherAbstract||Publication.Abstract||--||The abstract can contain markup which should be kept. | ||
|- | |-bgcolor="#B4EEB4" | ||
| ArticleSet.Article.CopyrightInformation||no mapping ||--||Perhaps with new R5 copyrighht feature? | | ArticleSet.Article.CopyrightInformation||no mapping ||--||Perhaps with new R5 copyrighht feature? | ||
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Revision as of 13:12, 5 March 2009
BioMed Central - PubMan Mapping[edit]
Mapping[edit]
| BioMed Central Element | PubMan Metadata Set | Attribute | Description |
|---|---|---|---|
| ArticleSet.Article | Publication set type="article" and Publication.Source set type="journal" | -- | Root envelop |
| ArticleSet.Article.Journal.PublisherName | Publication.Source.PublishingInfo.Publisher | -- | |
| ArticleSet.Article.Journal.JournalTitle | Publication.Source.Title | -- | |
| ArticleSet.Article.Journal.Issn | Publication.Source.Identifier set Type="eidt:ISSN" | -- | |
| ArticleSet.Article.Journal.Volume | Publication.Source.Volume | -- | |
| ArticleSet.Article.Journal.Issue | Publication.Source.Issue | -- | |
| ArticleSet.Article.Journal.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Journal.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Journal.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Journal.PubDate.Season | not mapped | -- | |
| ArticleSet.Article.Replaces | not mapped | -- | The identifier of the article that this one replaces. |
| ArticleSet.Article.ArticleTitle | Publication.Title | -- | |
| ArticleSet.Article.VernacularTitle | Publication.AlternativeTitle | -- | The article title in the original language, if not in English. Used only for Latin based alphabets. |
| ArticleSet.Article.FirstPage | Publication.Source.StartPage | -- | |
| ArticleSet.Article.FirstPage.LZero.save/delete | not mapped | LZero | How to handle leading zeros |
| ArticleSet.Article.LastPage | Publication.Source.EndPage | -- | .. |
| ArticleSet.Article.ELocationID | Publication.Source.SequenceNumber | -- | |
| ArticleSet.Article.ELocationID.ValidYN.Y/N | not mapped | ValidYN | |
| ArticleSet.Article.AuthorList.Author | Publication.Creator set role = "Author" | -- | |
| ArticleSet.Article.AuthorList.Author.FirstName | Publication.Creator.Person.GivenName | -- | |
| ArticleSet.Article.AuthorList.Author.MiddleName | not mapped | -- | |
| ArticleSet.Article.AuthorList.Author.LastName | Publication.Creator.Person.FamilyName | -- | |
| ArticleSet.Article.AuthorList.Author.Suffix | not mapped | -- | The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.". |
| ArticleSet.Article.AuthorList.Author.CollectiveName | Publication.CompleteName | -- | |
| ArticleSet.Article.AuthorList.Author.Affiliation | Publication.Creator.Person.Organization.Name, Publication.Creator.Person.Organization.Identifier=<external organization identifier> | -- | |
| ArticleSet.Article.GroupList.Group | Publication.Creator set role = "Author" | -- | |
| ArticleSet.Article.GroupList.Group.GroupName | Publication.Creator.Organization.Name | -- | |
| ArticleSet.Article.GroupList.Group.IndividualName | Publication.Creator.Organization.Name | -- | |
| ArticleSet.Article.GroupList.Group.IndividualName.MiddleName | not mapped | -- | |
| ArticleSet.Article.GroupList.Group.IndividualName.LastName | .. | -- | ??? |
| ArticleSet.Article.GroupList.Group.IndividualName.Suffix | not mapped | -- | |
| ArticleSet.Article.GroupList.Group.IndividualName.Affiliation | .. | -- | ??? |
| ArticleSet.Article.PublicationType | not mapped ??? | -- | Free Text |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.doi | Publication.Identifier set Type="dcterms:DOI" | idType | |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pii | Publication.Identifier set Type="other" | idType | set prefix pii: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcpid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmpid | Publication.Identifier set Type="other" | idType | set prefix pmpid: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pubmed | Publication.Identifier set Type="other" | idType | set prefix pubmed: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.medline | Publication.Identifier set Type="other" | idType | set prefix medline: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcid | Publication.Identifier set Type="other" | idType | set prefix pmcid: |
| ArticleSet.Article.History.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.History.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.History.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.History.PubDate.Season | not mapped | -- | |
| ArticleSet.Article.Abstract | Publication.Abstract | -- | |
| ArticleSet.Article.Abstract.sup | Publication.Abstract ??? | -- | What is the difference? Could not find example. |
| ArticleSet.Article.Abstract.inf | Publication.Abstract ??? | -- | What is the difference? Could not find example. |
| ArticleSet.Article.OtherAbstract | Publication.Abstract | -- | The abstract can contain markup which should be kept. |
| ArticleSet.Article.CopyrightInformation | no mapping | -- | Perhaps with new R5 copyrighht feature? |
| ArticleSet.Article.ObjectList.Param.Type.Name | .. | Type | .. |
PubStatus Mapping[edit]
| PubStatus | PubMan DateType | Description |
|---|---|---|
| received | submitted | date manuscript received for review |
| accepted | accepted | accepted for publication |
| epublish | published online | |
| ppublish (default) | published in print | |
| revised | modified | article revised by publisher or author |
| aheadofprint | published online | electronically published, but followed by print |
| pmc | ||
| pmcr | ||
| pubmed | ||
| pubmedr | ||
| premedline | ||
| medline | ||
| medliner |
Annotations[edit]
This mapping bases on the BioMed Central pubmed schema which is an extension of the NCBI pubmed schema (see references).