PubMan Func Spec Submission/BioMed Central Mapping
BioMed Central - PubMan Mapping[edit]
Mapping[edit]
| BioMed Central Element | PubMan Metadata Set | Attribute | Description |
|---|---|---|---|
| ArticleSet.Article | Publication set type="article" and Publication.Source set type="journal" | -- | Root envelop |
| ArticleSet.Article.Journal.PublisherName | Publication.Source.PublishingInfo.Publisher | -- | |
| ArticleSet.Article.Journal.JournalTitle | Publication.Source.Title | -- | |
| ArticleSet.Article.Journal.Issn | Publication.Source.Identifier set Type="eidt:ISSN" | -- | |
| ArticleSet.Article.Journal.Volume | Publication.Source.Volume | -- | |
| ArticleSet.Article.Journal.Issue | Publication.Source.Issue | -- | |
| ArticleSet.Article.Journal.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Journal.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Journal.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
| not mapped | -- | The identifier of the article that this one replaces. | |
| ArticleSet.Article.ArticleTitle | Publication.Title | -- | |
| ArticleSet.Article.VernacularTitle | Publication.AlternativeTitle | -- | The article title in the original language, if not in English. Used only for Latin based alphabets. |
| ArticleSet.Article.FirstPage | Publication.Source.StartPage | -- | |
| not mapped | LZero | How to handle leading zeros | |
| ArticleSet.Article.LastPage | Publication.Source.EndPage | -- | |
| ArticleSet.Article.ELocationID | Publication.Source.SequenceNumber | -- | |
| not mapped | ValidYN | ||
| ArticleSet.Article.AuthorList.Author | Publication.Creator set role = "Author" | -- | |
| ArticleSet.Article.AuthorList.Author.FirstName | Publication.Creator.Person.GivenName | -- | |
| ArticleSet.Article.AuthorList.Author.MiddleName | add to Publication.Creator.Person.GivenName | -- | |
| ArticleSet.Article.AuthorList.Author.LastName | Publication.Creator.Person.FamilyName | -- | |
| not mapped | -- | The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Does not include honorific titles, e.g. "M.D.", "Ph.D.". | |
| ArticleSet.Article.AuthorList.Author.CollectiveName | Publication.Creator set role = "Author" Publication.Creator.Organization.Name |
-- | The name of the authoring committee or organization. CollectiveName can be used instead of or in addition to a personal name. Note: Create own creator block. |
| ArticleSet.Article.AuthorList.Author.Affiliation | Publication.Creator.Person.Organization.Name | -- | |
| not mapped | -- | No example could be found how this field is used | |
| not mapped | -- | ||
| not mapped | -- | ||
| not mapped | -- | ||
| not mapped | -- | ||
| not mapped | -- | ||
| not mapped | -- | ||
| not mapped | -- | Used to identify the type of article. The only available PublicationTypes are NEWS, LETTER or EDITORIAL. The default value, JOURNAL ARTICLE, will be added to citations if this tag is left blank or an invalid PublicationType is used. Short: a refinement of the genre article, which we do not have in PubMan | |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.doi | Publication.Identifier set Type="dcterms:DOI" | idType | |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pii | Publication.Identifier set Type="pii" | idType | |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcpid | Publication.Identifier set Type="other" | idType | set prefix pmcpid: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmpid | Publication.Identifier set Type="other" | idType | set prefix pmpid: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pubmed | Publication.Identifier set Type="pmid" | idType | |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.medline | Publication.Identifier set Type="other" | idType | set prefix medline: |
| ArticleSet.Article.ArticleIdList.ArticleId.IdType.pmcid | Publication.Identifier set Type="pmc" | idType | |
| ArticleSet.Article.History.PubDate.Year | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.History.PubDate.Month | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.History.PubDate.Day | Publication.Date | pubStatus | see pubStatus mapping |
| ArticleSet.Article.Abstract | Publication.Abstract | -- | The abstract element can contain markup which we have to parse out |
| ArticleSet.Article.OtherAbstract | Publication.Abstract | -- | The abstract element can contain markup which we have to parse out |
| ArticleSet.Article.CopyrightInformation | dc:rights | -- | Default(copyright): http://www.biomedcentral.com/info/about/copyright Default(license):http://www.biomedcentral.com/info/about/license |
| not mapped | Type = freetext | Could not find example |
PubStatus Mapping[edit]
Mapping of PubStatus Type to PubMan DateType:
| PubStatus | PubMan DateType | Description |
|---|---|---|
| received | submitted | date manuscript received for review |
| accepted | accepted | accepted for publication |
| epublish | published online | |
| ppublish (default) | published in print | |
| revised | modified | article revised by publisher or author |
| aheadofprint | published online | electronically published, but followed by print |
| pmc | not mapped | Record is available in PubMed Central |
| pmcr | not mapped | ??? |
| pubmed | not mapped | Record is available in PubMed |
| pubmedr | not mapped | ??? |
| premedline | not mapped | this is a record in process of creation Medline - record is part of the Medline data |
| medline | not mapped | Record is available in medline |
| medliner | not mapped | ??? |
If no PubStatus is provided DateType should be 'published in print' (default).
Annotations[edit]
This mapping bases on the BioMed Central pubmed schema which is an extension of the NCBI pubmed schema (see references).